{"name":"1000 Genomes phase3:GRCh38","referenceSetId":"GRCh38","metadata":[{"description":"Confidence interval around END for imprecise variants","key":"INFO","type":"Integer","number":"2","info":{},"id":"CIEND"},{"info":{},"id":"CIPOS","number":"2","type":"Integer","key":"INFO","description":"Confidence interval around POS for imprecise variants"},{"number":"1","info":{},"id":"CS","type":"String","key":"INFO","description":"Source call set."},{"info":{},"number":"1","id":"END","type":"Integer","key":"INFO","description":"End coordinate of this variant"},{"type":"Flag","number":"0","info":{},"id":"IMPRECISE","description":"Imprecise structural variation","key":"INFO"},{"type":"String","info":{},"id":"MC","number":".","description":"Merged calls.","key":"INFO"},{"key":"INFO","description":"Mobile element info of the form NAME,START,ENDPOLARITY; If there is only 5' OR 3' support for this call, will be NULL NULL for START and END","id":"MEINFO","info":{},"number":"4","type":"String"},{"id":"MEND","info":{},"number":"1","type":"Integer","key":"INFO","description":"Mitochondrial end coordinate of inserted sequence"},{"key":"INFO","description":"Estimated length of mitochondrial insert","id":"MLEN","info":{},"number":"1","type":"Integer"},{"type":"Integer","id":"MSTART","info":{},"number":"1","description":"Mitochondrial start coordinate of inserted sequence","key":"INFO"},{"description":"Difference in length between REF and ALT alleles","key":"INFO","type":"Integer","info":{},"id":"SVLEN","number":"."},{"description":"Type of structural variant","key":"INFO","type":"String","id":"SVTYPE","info":{},"number":"1"},{"description":"Precise Target Site Duplication for bases, if unknown, value will be NULL","key":"INFO","type":"String","number":"1","info":{},"id":"TSD"},{"key":"INFO","description":"Total number of alternate alleles in called genotypes","id":"AC","info":{},"number":"A","type":"Integer"},{"key":"INFO","description":"Estimated allele frequency in the range (0,1)","number":"A","info":{},"id":"AF","type":"Float"},{"description":"Number of samples with data","key":"INFO","type":"Integer","number":"1","info":{},"id":"NS"},{"key":"INFO","description":"Total number of alleles in called genotypes","info":{},"id":"AN","number":"1","type":"Integer"},{"type":"Float","info":{},"number":"A","id":"EAS_AF","description":"Allele frequency in the EAS populations calculated from AC and AN, in the range (0,1)","key":"INFO"},{"id":"EUR_AF","info":{},"number":"A","type":"Float","key":"INFO","description":"Allele frequency in the EUR populations calculated from AC and AN, in the range (0,1)"},{"type":"Float","info":{},"number":"A","id":"AFR_AF","description":"Allele frequency in the AFR populations calculated from AC and AN, in the range (0,1)","key":"INFO"},{"description":"Allele frequency in the AMR populations calculated from AC and AN, in the range (0,1)","key":"INFO","type":"Float","info":{},"number":"A","id":"AMR_AF"},{"key":"INFO","description":"Allele frequency in the SAS populations calculated from AC and AN, in the range (0,1)","number":"A","info":{},"id":"SAS_AF","type":"Float"},{"type":"Integer","info":{},"number":"1","id":"DP","description":"Total read depth","key":"INFO"},{"info":{},"number":"A","id":"ssID","type":"String","key":"INFO","description":"dbSNP ssID of the allele"},{"key":"INFO","description":"The transformationm for dbSNP results in different POS for the alleles on this line","info":{},"id":"TRANSFORM_TO_DIFFERENT_POS","number":"0","type":"Flag"},{"type":"Flag","info":{},"id":"ASP","number":"0","description":"Is Assembly specific. This is set if the variant only maps to one assembly (dbSNP flag)","key":"INFO"},{"description":"Weight, 00 - unmapped, 1 - weight 1, 2 - weight 2, 3 - weight 3 or more (dbSNP flag)","key":"INFO","type":"Integer","info":{},"number":"1","id":"WGT"},{"key":"INFO","description":"RS orientation is reversed (dbSNP flag)","number":"0","info":{},"id":"RV","type":"Flag"},{"id":"WGT_ref_RS","info":{},"number":"1","type":"String","key":"INFO","description":"rsID to which the remapping of INFO flag WGT relates"},{"info":{},"id":"ERR_REF","number":"0","type":"Flag","key":"INFO","description":"The REF cannot be resolved between builds"},{"number":"0","info":{},"id":"MATCHED_REV","type":"Flag","key":"INFO","description":"The REF matched the - strand in GRCh38"},{"description":"The REF matched the + strand in GRCh38","key":"INFO","type":"Flag","number":"0","info":{},"id":"MATCHED_FWD"},{"description":"The REF and ALT have switched between GRCh37 and GRCh38","key":"INFO","type":"Flag","info":{},"id":"SWITCHED_REF","number":"0"},{"info":{},"id":"REF_SWITCHED_TO_NON_PHASE3_ALT","number":"0","type":"Flag","key":"INFO","description":"The REF has changed to a non-PHASE3 ALT"},{"info":{},"id":"ALLELES_DIFFERENT_POS","number":"0","type":"Flag","key":"INFO","description":"dbSNP has different POS for ALTS on the same line"},{"key":"INFO","description":"An ID has been missed in remapping","info":{},"number":"0","id":"MISSED_ID","type":"Flag"},{"key":"INFO","description":"An ALT has been missed in remapping","info":{},"number":"0","id":"MISSED_ALT","type":"Flag"},{"type":"Flag","info":{},"id":"NO_RS_TO_MAP_TO","number":"0","description":"The rs cannot be used to remap","key":"INFO"},{"type":"String","id":"GT","info":{},"number":"1","description":"Genotype","key":"FORMAT"}],"datasetId":"6e340c4d1e333c7a676b1710d2e3953c","id":"1"}